Cerebellum: Folding into shape

A new computational tool provides insights into the structure of the cerebellum in mammals.
  1. Héloïse de Vareilles  Is a corresponding author
  1. Department of Psychiatry, University of Cambridge, United Kingdom

During development, the brains of most mammals (including humans) will fold into a unique pattern of grooves and ridges. Understanding how these wrinkles emerge can provide important insights into how the brain works. Most research in this area has focused on the structure of the cerebrum, the two large lobes that make up most of the brain. However, much less is known about the structure of the cerebellum – the ‘little brain’ that sits beneath the cerebrum.

The anatomical properties of the cerebrum – such as the number of folds it contains, its thickness and surface area – have been shown to vary between mammalian species and to influence cognitive processes in humans (Mota and Herculano-Houzel, 2015, Cachia et al., 2021). Unlike the cerebrum, which is folded in some mammals (such as humans) but flat in others (such as mice), the cerebellum always has a wrinkled appearance. The structure of the cerebellum is also more uniform across different species (including some invertebrates), and this has led to the assumption that its folds have less of an influence on cognition than the folds of the cerebrum. However, recent work suggests that the cerebellum may have a bigger role in cognition than previously thought (Buckner, 2013).

In 2020, Ken Ashwell of the University of New South Wales compared the volumes of the cerebellum and cerebrum in monotremes, marsupials and eutherian mammals (Ashwell, 2020). However, the study did not dive into the detailed anatomy of the cerebellum, as its small size and highly folded configuration are difficult to examine using conventional methods. Now, in eLife, Roberto Toro from the Institut Pasteur and colleagues – including Katja Heuer as first author – report a new approach for investigating the shape of the cerebellum in mammals (Heuer et al., 2023).

The team developed a computational method that can measure the surface area of the cerebellum, the shape of its individual folds, and the thickness of its most superficial layer (Figure 1A). The approach, which is freely available, was validated by ensuring that it could produce results that fitted with previously reported data. It was then applied to histological slices extracted from the cerebellums of 56 different mammals, including slices examined in the Ashwell study (Figure 1B).

Comparing the structure of the cerebellum in mammalian species.

(A) Heuer et al. created a computational model that can automatically identify grooves in the cerebellum and measure various metrics (shown in red), including the width (bottom left) and perimeter (bottom right) of individual folds. (B) The model was applied to histological slices extracted from the cerebellums of 56 mammals. The results of this analysis are shown for five species (which are displayed on the same scale). Heuer et al. estimated that most mammals are descended from a species that had a cerebellum similar to that of the rock hyrax (bottom right).

Image credit: Adapted from Figure 1 and Figure 3 of the manuscript by Heuer et al., 2023

Heuer et al. – who are based at various institutes in France, the United Kingdom and Germany – found that the different folding metrics detected by their model could be split in to two groups: ones that varied a lot between species (such as surface area), and ones that did not vary as much (such as the width of individual folds). While body size varied by 11 orders of magnitude within the sample, the surface area of the cerebellum varied much less (by around 2.5 orders of magnitude), and the width between two folds only varied by 0.5 orders of magnitude. This suggests that larger mammals have larger cerebellums, but the size of their folds are relatively thin in comparison.

The folding metrics measured also scaled within species. For instance, bigger cerebellums had a higher number of folds than smaller ones an effect which has also been observed in the cerebrum (Germanaud et al., 2012). Species with larger cerebrums also appeared to have relatively smaller cerebellums.

Heuer et al. then set out to find which computational model of evolution was able to recreate the anatomies of the cerebellums found in the different mammalian species. They found that a stabilising model – that is, when animals that are straying away from their common ancestor randomly evolve back to these initial properties – worked best. Using this model, Heuer et al. estimated that the organism most mammals descended from probably had a cerebellum similar to the one found in an animal known as the rock hyrax (Figure 1B).

These observations, along with other results reported by Heuer et al., provide food for thought about the mechanics of brain folding. Although the composition of cells within the cerebellum differ from those in the cerebrum, Heuer et al. propose that these parts of the brain fold in the same way, with the most superficial layer expanding more than the layer immediately below. This process, along with neurons in the cerebellum developing in a certain way, may lead to specific patterns of grooves and ridges forming in the cerebellums of different species. In the future, the new tool created by Heuer et al. could be used to see if these observations occur in the cerebellums of other species (including non-mammals), and to look in to the ‘folds within folds’ that appear in larger cerebellums in more detail.

References

Article and author information

Author details

  1. Héloïse de Vareilles

    Héloïse de Vareilles is in the Department of Psychiatry, University of Cambridge, Cambridge, United Kingdom

    For correspondence
    heloise.devareilles@protonmail.com
    Competing interests
    No competing interests declared
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-7782-9701

Publication history

  1. Version of Record published: November 9, 2023 (version 1)

Copyright

© 2023, de Vareilles

This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 736
    views
  • 44
    downloads
  • 0
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Héloïse de Vareilles
(2023)
Cerebellum: Folding into shape
eLife 12:e93122.
https://doi.org/10.7554/eLife.93122
  1. Further reading

Further reading

    1. Computational and Systems Biology
    2. Evolutionary Biology
    Kenya Hitomi, Yoichiro Ishii, Bei-Wen Ying
    Research Article

    As the genome encodes the information crucial for cell growth, a sizeable genomic deficiency often causes a significant decrease in growth fitness. Whether and how the decreased growth fitness caused by genome reduction could be compensated by evolution was investigated here. Experimental evolution with an Escherichia coli strain carrying a reduced genome was conducted in multiple lineages for approximately 1000 generations. The growth rate, which largely declined due to genome reduction, was considerably recovered, associated with the improved carrying capacity. Genome mutations accumulated during evolution were significantly varied across the evolutionary lineages and were randomly localized on the reduced genome. Transcriptome reorganization showed a common evolutionary direction and conserved the chromosomal periodicity, regardless of highly diversified gene categories, regulons, and pathways enriched in the differentially expressed genes. Genome mutations and transcriptome reorganization caused by evolution, which were found to be dissimilar to those caused by genome reduction, must have followed divergent mechanisms in individual evolutionary lineages. Gene network reconstruction successfully identified three gene modules functionally differentiated, which were responsible for the evolutionary changes of the reduced genome in growth fitness, genome mutation, and gene expression, respectively. The diversity in evolutionary approaches improved the growth fitness associated with the homeostatic transcriptome architecture as if the evolutionary compensation for genome reduction was like all roads leading to Rome.

    1. Evolutionary Biology
    Case Vincent Miller, Jen A Bright ... Michael Pittman
    Research Article

    Enantiornithines were the dominant birds of the Mesozoic, but understanding of their diet is still tenuous. We introduce new data on the enantiornithine family Bohaiornithidae, famous for their large size and powerfully built teeth and claws. In tandem with previously published data, we comment on the breadth of enantiornithine ecology and potential patterns in which it evolved. Body mass, jaw mechanical advantage, finite element analysis of the jaw, and traditional morphometrics of the claws and skull are compared between bohaiornithids and living birds. We find bohaiornithids to be more ecologically diverse than any other enantiornithine family: Bohaiornis and Parabohaiornis are similar to living plant-eating birds; Longusunguis resembles raptorial carnivores; Zhouornis is similar to both fruit-eating birds and generalist feeders; and Shenqiornis and Sulcavis plausibly ate fish, plants, or a mix of both. We predict the ancestral enantiornithine bird to have been a generalist which ate a wide variety of foods. However, more quantitative data from across the enantiornithine tree is needed to refine this prediction. By the Early Cretaceous, enantiornithine birds had diversified into a variety of ecological niches like crown birds after the K-Pg extinction, adding to the evidence that traits unique to crown birds cannot completely explain their ecological success.